Here is a list of all files with brief descriptions:

boundary.c
boundary.h [code]
common.c
common.h [code]
debug.c
debug.h [code]
documentation.h [code]
error.c
error.h [code]
forcing.c
forcing.h [code]
get_frame.m
gfft.c
gfft.h [code]
grammar.c
grammar.h [code]
gvars.h [code]
problem/bench/gvars.h [code]
problem/convection/gvars.h [code]
problem/couette/gvars.h [code]
problem/default/gvars.h [code]
problem/ltide/gvars.h [code]
problem/mri/gvars.h [code]
problem/mric/gvars.h [code]
problem/mvi/gvars.h [code]
problem/sbi/gvars.h [code]
problem/shear_dynamo/gvars.h [code]
problem/sheared_convection_wall/gvars.h [code]
initflow.c
initflow.h [code]
interface.c
interface.h [code]
libconfig.c
libconfig.h [code]
ltide.c
ltide.h [code]
mainloop.c
mainloop.h [code]
output.c
output.h [code]
output_common.c
output_common.h [code]
output_dump.c
output_dump.h [code]
output_spectrum.c
output_spectrum.h [code]
output_timevar.c
output_timevar.h [code]
output_vtk.c
output_vtk.h [code]
particles.c
particles.h [code]
plotXY.m
plotXZ.m
plotYZ.m
private.h [code]
read_config.c
read_config.h [code]
ReadSpectrum.m
readVTK.m
scanner.c
scanner.h [code]
shear.c
shear.h [code]
snoopy.c
snoopy.h [code]
symmetries.c
symmetries.h [code]
timestep.c
timestep.h [code]
timestep_compressible.c
timevol.m
timevol_new.m
transpose.c
transpose.h [code]